You can find the links to all preprocessed data used in our manuscript at Zenodo for the SGNEx data and for the others samples. All the raw fast5 and fastq files are also available at ENA and SGNEx. Please refer to our Supplementary Table S7 in our manuscript for full details of data download.
Note that all HEK293T-KO samples can be used as unmodified (m6A) controls for any other data set generated with the same RNA kit (SQK-RNA001). If the cells are genetically different, we recommend to perform variant calling before finalising the list of differentially modified sites in order to remove false positives.